PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508821.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 357aa    MW: 40118.5 Da    PI: 8.5725
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.65.1e-241782171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll+++fl+l+++ +   + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  XP_004508821.1 17 RKQKSLGLLCTNFLSLYNRDNVHLIGLDDAATRL---GV--ERRRIYDIVNVLESIGVLARKAKNQYTWKG 82
                    79*****************999************...**..****************************98 PP

2E2F_TDP76.52.7e-24153233171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL lltq+f+kl+ +s+ ++++l+++a+ L+ +      +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  XP_004508821.1 153 RREKSLALLTQNFVKLFVCSNVEMISLDDAARLLLGDaynssTMRTKVRRLYDIANVLTSMNLIEKthttdTRKPAFRWLG 233
                     689*******************************************************************99*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-261383IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.23E-161680IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-281782IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-201882IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-23150235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-29153233IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-19155233IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.65E-13155234IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSSDPPSS RHHTYNRKQK SLGLLCTNFL SLYNRDNVHL IGLDDAATRL GVERRRIYDI  60
VNVLESIGVL ARKAKNQYTW KGFAAIPVAL QELKEEGLWN NLNSHEAGNE GGNEDAKVSD  120
EDDEEESLSQ PTGSQSDSLN PNSTVPRSLK NDRREKSLAL LTQNFVKLFV CSNVEMISLD  180
DAARLLLGDA YNSSTMRTKV RRLYDIANVL TSMNLIEKTH TTDTRKPAFR WLGLKGKTWN  240
ESIYNSNQNE SRKRAFGNDV TNISFTRSNR TDFFMSGDFS QNIKKQKTQE NDSGLCQEDK  300
SNMKQGIKQA SSNYQFGPFA PAFVSKAGNS ENSKVKQAHD WESLATAHCP QYQNQGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-38162253228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508821.10.0PREDICTED: E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ41e-114E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLG7JNS60.0G7JNS6_MEDTR; E2F transcription factor-E2FE-like protein
STRINGGLYMA17G10130.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-106DP-E2F-like 1